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DISQOVER - Data sources

DISQOVER

Data sources

Our knowledge tool DISQOVER connects your internal data with over 140 data sources in one easy-to-use platform.

+ 140 trusted data sources

  • 1000 Genomes Project

    The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalog of human variation and genotype data. The goal of the 1000 Genomes Project was to find the most genetic variants with frequencies of at least 1% in the populations studied. The dataset loaded in DISQOVER is including all variations from 1000 genomes VCF file, with PASS filter, and is covering a subset of 202 genes that are somatically mutated and causally implicated in human cancer, from the COSMIC database

  • 7th Framework Programme

    FP7 is the short name for the Seventh Framework Programme for Research and Technological Development. This was the EU's main instrument for funding research in Europe, running from 2007 to 2013. FP7 was designed to respond to Europe's employment needs, competitiveness, and quality of life.

  • Anatomical Therapeutic Chemical

    The Anatomical Therapeutic Chemical (ATC) classification system, divides active substances into different groups according to the organ or system on which they act and their therapeutic, pharmacological and chemical properties. Drugs are classified in groups at five different levels, Drugs are divided into fourteen main groups (1st level), with pharmacological/therapeutic subgroups (2nd level). The 3rd and 4th levels are chemical/pharmacological/therapeutic subgroups and the 5th level is the chemical substance. The Anatomical Therapeutic Chemical (ATC) classification system and the Defined Daily Dose (DDD) is a tool for exchanging and comparing data on drug use at international, national or local levels.

  • Antibody Registry

    The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.

  • BRCA Exchange

    The BRCA Exchange website is a product of the BRCA Challenge of the Global Alliance for Genomics and Health. It provides information on catalogued BRCA1 and BRCA2 genetic variants. By default, it shows variants that have been curated and classified by an international expert panel, the ENIGMA consortium, to assess their pathogenicity (associated disease risk). Optional settings allow the user to look at unclassified variants.

  • Cellosaurus

    The cellosaurus is a knowledge resource on cell lines. It attempts to describe all cell lines used in biomedical research. Bairoch A. The Cellosaurus, a cell line knowledge resource. J. Biomol. Tech. (2018) 29:25-38 DOI: 10.7171/jbt.18-2902-002, PMID: 2980532

  • ChEBI

    Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on 'small' chemical compounds.

  • ChEMBL

    ChEMBL is a database of bioactive drug-like small molecules, it contains 2-D structures, calculated properties (e.g. logP, Molecular Weight, Lipinski Parameters, etc.), and abstracted bioactivities (e.g. binding constants, pharmacology, and ADMET data). The data is abstracted and curated from the primary scientific literature, and cover a significant fraction of the SAR and discovery of modern drugs.

  • ClinicalTrials.gov

    ClinicalTrials.gov provides free access to information on clinical studies for a wide range of diseases and conditions. Studies listed in the database are conducted in 175 countries

  • ClinVar Record

    ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship-specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.

  • Cooperative Patent Classification

    The Cooperative Patent Classification (CPC) is a patent classification system, developed jointly by the European Patent Office (EPO) and the United States Patent and Trademark Office (USPTO). It is based on the previous European classification system (ECLA), which itself was a version of the International Patent Classification (IPC) system. The CPC patent classification system has been used by EPO and USPTO since 1st January 2013.

  • CORDIS

    The Community Research and Development Information Service (CORDIS) is the European Commission's primary source of results from the projects funded by the EU's framework programmes for research and innovation (FP1 to Horizon 2020).

  • DailyMed

    DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and downloads resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recently submitted to the Food and Drug Administration (FDA) and is currently, in use, it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.

  • dbSNP

    The dbSNP database is a repository for single base nucleotide substitutions, short deletion, and insertion polymorphisms. The dataset loaded in DISQOVER includes all variants with a cross-reference from SwissVar, DisGeNET, and Provean. In addition, it covers all variants of a manually curated subset of genes that are somatically mutated and causally implicated in human cancer from the COSMIC database.

  • dbVar

    dbVar is NCBI's database of genomic structural variation. It houses variation data generated mostly by published studies of various organisms. Variants typically have lengths of 50 nucleotides or longer.

  • DrugCentral

    DrugCentral provides information on active ingredients chemical entities, pharmaceutical products, drug mode of action, indications, and pharmacologic action.

  • Eagle-i

    Eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Centrally Curated Resources

    Centrally Curated Resources is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Charles R. Drew University of Medicine and Science

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  • Eagle-i: City College of New York, CUNY

    City College of New York, City University of New York is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Clark Atlanta University

    Clark Atlanta University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Dartmouth College

    Dartmouth College is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Florida Agricultural and Mechanical University

    Florida Agricultural and Mechanical University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Fred Hutchinson Cancer Research Center

    Fred Hutchinson Cancer Research Center is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Harvard University

    Harvard University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Harvard University Immunology Collection

    Harvard University Immunology Collection is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Howard University

    Howard University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Hunter College, CUNY

    Hunter College, CUNY is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Institute of Translational Health Sciences Regional Directory

    ITHS Regional Directory is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Jackson State University

    Jackson State University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Meharry Medical College

    Meharry Medical College is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Michigan State University

    Michigan State University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Montana State University

    Montana State University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Morehouse School of Medicine

    Morehouse School of Medicine is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Ontology

    Contains the eagle-i ontology.

  • Eagle-i: Oregon Health and Science University

    Oregon Health and Science University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Ponce School of Medicine and Health Sciences

    Ponce School of Medicine and Health Sciences is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Special Collections

    Special Collections is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Texas Southern University

    Texas Southern University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: The Ohio State University

    The Ohio State University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Tuskegee University

    Tuskegee University is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Universidad Central del Caribe

    Universidad Central del Caribe is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: University of Alaska Fairbanks

    The University of Alaska Fairbanks is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: University of Hawai'i Manoa

    University of Hawai'i Manoa is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: University of Pennsylvania

    University of Pennsylvania is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: University of Puerto Rico

    The University of Puerto Rico is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: University of Texas at El Paso

    University of Texas at El Paso is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: University of Texas at San Antonio

    University of Texas at San Antonio is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Washington State University Spokane

    Washington State University Spokane is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Washington University NIMH Genetics

    Washington University NIMH Genetics is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • Eagle-i: Xavier University of Louisiana

    Xavier University of Louisiana is a member of the eagle-i consortium. eagle-i is a resource discovery tool built to facilitate translational science research.

  • ENZYME

    The ENZYME database is a repository of information related to the nomenclature of enzymes.

  • EPO

    The European Patent Organisation is an intergovernmental organization that was set up on 7 October 1977 on the basis of the European Patent Convention (EPC) signed in Munich in 1973. It has two bodies, the European Patent Office and the Administrative Council, which supervise the Office's activities.

  • EudraCT

    EudraCT (European Union Drug Regulating Authorities Clinical Trials) is the European Clinical Trials Database of all clinical trials of investigational medicinal products with at least one site in the European Union commencing 1 May 2004 or later.

  • Evidence Ontology

    The Evidence Ontology (ECO) is a controlled vocabulary of terms that describe scientific evidence in the realm of biological research. ECO can be used to document both the evidence that supports a scientific conclusion and how that conclusion was recorded by a scientist, whether a person or a computer.

  • Experimental Factor Ontology

    The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.

  • ExPORTER

    Description ExPORTER provides access to RePORTER data files that include information on research projects funded by the National Institutes of Health (NIH), Centers for Disease Control and Prevention (CDC), Agency for Healthcare Research and Quality (AHRQ), Health Resources and Services Administration (HRSA), Substance Abuse and Mental Health Services Administration (SAMHSA), and U.S. Department of Veterans Affairs (VA), as well as publications, patents, and clinical studies citing support from these projects. The data are separated into four major categories: Projects, Publications, Patents, and Clinical Studies. There are also “Link Tables” that can be used to establish the many-to-many relationships between projects and their publications. To keep the project files to a manageable size, abstracts are stored in their own “Project Abstract” files and all other project information is in the “Project Data” files.

  • FDA Adverse Event Reporting System (FAERS) Drug Events

    The FDA Adverse Event Reporting System (FAERS) is a database that contains adverse event reports, medication error reports and product quality complaints resulting in adverse events that were submitted to FDA. The database is designed to support the FDA's post-marketing safety surveillance program for drug and therapeutic biologic products.

  • Federal Information Processing Series (FIPS)

    Federal Information Processing Series (FIPS) codes are standardized numeric or alphabetic codes issued by the American National Standards Institute (ANSI) to ensure uniform identification of geographic entities in the United States.

  • FRIS

    FRIS-researchportal

  • Gene Ontology

    The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.

  • HUGO Gene Nomenclature Committee

    The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. HGNC identifiers refer to records in the HGNC symbol database.

  • GHR

    Genetics Home Reference is the National Library of Medicine's Web site for consumer information about genetic conditions and the genes or chromosomes associated with those conditions.

  • gnomAD

    The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community. The dataset loaded in DISQOVER is including all variations from gnomAD VCF file, with PASS filter and is covering a subset of manually curated genes that are somatically mutated and causally implicated in human cancer from the COSMIC database (http://cancer.sanger.ac.uk/cosmic/curation).

  • GRID

    Global Research Identifier Database (GRID) is a database of educational and research organizations worldwide.

  • GUDID

    The Global Unique Device Identification Database (GUDID) contains key device identification information submitted to the FDA about medical devices that have Unique Device Identifiers (UDI).

  • HMDB

    The Human Metabolome Database (HMDB) is a database containing detailed information about small molecule metabolites found in the human body.It contains or links 1) chemical 2) clinical and 3) molecular biology/biochemistry data.

  • HomoloGene

    HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.

  • Horizon 2020

    The Horizon 2020 Research and Innovation programme is currently the EU's main instrument for funding research in Europe, running from 2014 to 2020. H2020 implements the Innovation Union, a Europe 2020 flagship initiative aimed at securing Europe's global competitiveness.

  • HSDB

    HSDB (Hazardous Substances Data Bank) contains comprehensive, peer-reviewed toxicology data for about 5,000 chemicals.

  • GeneRIF

    GeneRIF provides a simple mechanism to allow scientists to add to the functional annotation of genes described in Gene. To be processed, a valid Gene ID must exist for the specific gene, or the Gene staff must have assigned an overall Gene ID to the species. The latter case is implemented via records in Gene with the symbol NEWENTRY. Once the Gene ID is identified, only three types of information are required to complete a submission: a concise phrase describing a function or functions (less than 425 characters in length, the title of the paper will not be accepted) a published paper describing that function, implemented by supplying the PubMed ID of a citation in PubMed;a valid e-mail address (which will remain confidential). Access to the submission form is provided from the Bibliography section of the Gene default report view, so you don't have to retype the Gene ID or other identifiers (details below). GeneRIFs are intended to facilitate access to publications documenting experiments that add to our understanding of a gene and its function. Reports based solely on computational analyses are not in scope.

  • Human Disease Ontology

    The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts.

  • Human Phenotype Ontology

    The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM. HPO currently contains approximately 11,000 terms and over 115,000 annotations to hereditary diseases. The HPO also provides a large set of HPO annotations to approximately 4000 common diseases.

  • ICD10-CM

    The National Center for Health Statistics (NCHS), the Federal agency responsible for use of the International Statistical Classification of Diseases and Related Health Problems, 10th revision (ICD-10) in the United States, has developed a clinical modification of the classification for morbidity purposes. The ICD-10 is used to code and classify mortality data from death certificates, having replaced ICD-9 for this purpose as of January 1, 1999. ICD-10-CM is the replacement for ICD-9-CM, volumes 1 and 2, effective October 1, 2015.

  • ICD9-CM

    The International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM) is based on the World Health Organization's Ninth Revision, International Classification of Diseases (ICD-9). ICD-9-CM is the official system of assigning codes to diagnoses and procedures associated with hospital utilization in the United States. The ICD-9 was used to code and classify mortality data from death certificates until 1999, when use of ICD-10 for mortality coding started.

  • IMSR

    A collective of institutions, organizations or individuals that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Animal Resources Centre

    Animal Resources Centre is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Australian Phenome Bank

    Australian Phenome Bank is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Canadian Mouse Mutant Repository

    Canadian Mouse Mutant Repository is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Center for Animal Resources and Development

    Center for Animal Resources and Development is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Charles River Laboratories

    Charles River Laboratories is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Cornell Heart Lung Blood Resource for Optogenetic Mouse Signaling

    Cornell Heart Lung Blood Resource for Optogenetic Mouse Signaling is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Cystic Fibrosis Mouse Model Core

    Cystic Fibrosis Mouse Model Core is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Dr. Elizabeth M. Simpson, Ph.D.

    Dr. Elizabeth M. Simpson, Ph.D. is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: European Mouse Mutant Archive

    European Mouse Mutant Archive is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: European Mouse Mutant Cell Repository

    European Mouse Mutant Cell Repository is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: GemPharmatech

    GemPharmatech is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: JAX Mice and Services

    JAX Mice and Services is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Korea Mouse Phenotyping Center

    Korea Mouse Phenotyping Center is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: MRC Harwell

    MRC Harwell is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: MUGEN Mouse Database

    MUGEN Mouse Database is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Mutant Mouse Regional Resource Centers

    Mutant Mouse Regional Resource Centers is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: National Applied Research Laboratories

    National Applied Research Laboratories is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: National Cancer Institute at Frederick

    National Cancer Institute at Frederick is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: National Institute of Genetics

    National Institute of Genetics is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Oak Ridge Collection at JAX

    Oak Ridge Collection at JAX is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Oriental BioService, Inc.

    Oriental BioService, Inc. is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: RIKEN BioResource Center

    RIKEN BioResource Center is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Shanghai Model Organisms Center, Inc.

    Shanghai Model Organisms Center, Inc. is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Taconic Biosciences

    Taconic Biosciences is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: Texas A&M Institute for Genomic Medicine

    Texas A&M Institute for Genomic Medicine is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: The Knockout Mouse Project

    The Knockout Mouse Project is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • IMSR: University of North Carolina, Chapel Hill - Systems Genetics Core

    University of North Carolina, Chapel Hill - Systems Genetics Core is an institution, organization or individual that contributes mouse resource information to the IMSR (International Mouse Strain Resource) database.

  • InterPro

    InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences.

  • ISO Countries

    The two-letter codes and full country names used apply to the ISO 3166 Standard. Country synonyms are manually added, based on synonyms used in different sources.

  • IUPHAR Compendium

    The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation.

  • Journals

    Journals used in PubMed and NCBI Molecular Biology Database.

  • MeSH

    MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.

  • Mondo Disease Ontology

    Mondo is a semi-automatically constructed ontology that merges in multiple disease resources to yield a coherent merged ontology.

  • National Drug Code

    The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.

  • NCBI Gene

    Entrez Gene is the NCBI's database for gene-specific information, focusing on completely sequenced genomes, those with an active research community to contribute gene-specific information, or those that are scheduled for intense sequence analysis.

  • NCBI Taxonomy

    The NCBI Taxonomy Database contains the relationships between all living forms for which nucleic acid or protein sequence have been determined.

  • Nomenclature of territorial units for statistics (NUTS)

    The NUTS classification (Nomenclature of territorial units for statistics) is a hierarchical system for dividing up the economic territory of the EU and the UK.

  • Open Humans

    The Open Humans Foundation is a nonprofit organization dedicated to enabling individuals to access their data and share it with research studies.

  • Open Targets

    The Open Targets Platform is a comprehensive and robust data integration for access to potential drug targets associated with disease. It brings together multiple data types and aims to assist users to identify and prioritise targets for further investigation.

  • OpenCage Geocoder

    Geocoding data based on address lookup.

  • ORCID

    ORCID (Open Researcher and Contributor ID) is an open, non-profit, community-based effort to create and maintain a registry of unique identifiers for individual researchers. ORCID records hold non-sensitive information such as name, email, organization name, and research activities.

  • Orphanet Rare Disease Ontology

    The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.

  • PROVEAN

    PROVEAN (Protein Variation Effect Analyzer) was developed to predict whether a protein sequence variation affects protein function.

  • PubChem

    PubChem provides information on the biological activities of small molecules. It is a component of NIH's Molecular Libraries Roadmap Initiative. We only use a very limited subset of PubChem. This subset is only used to create mappings and is not providing other information.

  • PubMed

    PubMed is a service of the U.S. National Library of Medicine that includes citations from MEDLINE and other life science journals for biomedical articles back to the 1950s.

  • PubTator

    PubTator Central (PTC) is a Web-based system providing automatic annotations of biomedical concepts such as genes and mutations in PubMed abstracts and PMC full-text articles.

  • Reactome

    The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.

  • RxIMAGE

    The RxIMAGE API is a freely accessible Application Programming Interface that software developers can use to create apps for text-based search and retrieval from the RxIMAGE database. The RxIMAGE database is the Nation’s only portfolio of curated, freely available, increasingly comprehensive, high-quality digital images of prescription pills and associated data.

  • RxNorm

    RxNorm provides normalized names for clinical drugs and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software, including those of First Databank, Micromedex, MediSpan, Gold Standard Drug Database, and Multum. By providing links between these vocabularies, RxNorm can mediate messages between systems not using the same software and vocabulary.

  • SCImago Journal & Country Rank

    The SCImago Journal & Country Rank is a publicly available portal that includes the journals and country scientific indicators developed from the information contained in the Scopus® database (Elsevier B.V.). These indicators can be used to assess and analyze scientific domains.

  • Semanticscience Integrated Ontology

    The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes.

  • SNOMED CT

    SNOMED CT (Systematized Nomenclature of Medicine -- Clinical Terms), is a systematically organized computer processable collection of medical terminology covering most areas of clinical information such as diseases, findings, procedures, microorganisms, pharmaceuticals, etc.

  • SureChEMBL

    SureChEMBL provides free access to chemical data extracted from the patent literature.

  • SwissVar

    SwissVar is a portal to search variants in Swiss-Prot entries of the UniProt Knowledgebase (UniProtKB), and gives direct access to the Swiss-Prot Variant pages. The Swiss-Prot Variant pages summarize all the information related to a particular variant and contain: - manual annotation on the genotype-phenotype relationship of each specific variant based on literature;- pre-computed information (such as conservation scores and a list of structural features when available) to help assess the effect of the variant

  • Uberon

    Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.

  • UNII

    The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance’s molecular structure and/or descriptive information.

  • UniProt Knowledgebase

    The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation. In addition to capturing the core data mandatory for each UniProtKB entry (mainly, the amino acid sequence, protein name or description, taxonomic data and citation information), as much annotation information as possible is added. UniProt Consortium T. UniProt: the universal protein knowledgebase. Nucleic Acids Res. 2018 Mar 16;46(5):2699. doi: 10.1093/nar/gky092. PubMed PMID: 29425356;PubMed Central PMCID: PMC5861450.

  • WHO: International Clinical Trials Registry Platform

    The mission of the WHO International Clinical Trials Registry Platform is to ensure that a complete view of research is accessible to all those involved in health care decision making.

  • Wikidata

    Wikidata acts as central storage for the structured data of its Wikimedia sister projects including Wikipedia, Wikivoyage, Wikisource, etc.

  • WikiPathways

    WikiPathways is a resource providing an open and public collection of pathway maps created and curated by the community in a Wiki like style.

  • Wikipedia

    Wikipedia is a multilingual, web-based, free-content encyclopedia project based on an openly editable model. It is written collaboratively by largely anonymous Internet volunteers who write without pay.

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